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Harden distributed pipeline

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Emil
2026-07-24 14:16:42 +03:00
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README.md
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# SciMesh
SciMesh is a scientific-workload framework for molecular datasets. Its public CLI
currently runs exact similarity search and sparse similarity-graph construction
locally in one Python process; it creates no dense similarity matrix. A Python
Worker client and the planned Go/PostgreSQL coordinator contract are tracked in
the repository, but distributed execution is not available yet; see
[`STATUS.md`](STATUS.md).
runs exact similarity search and sparse similarity-graph construction locally in
one Python process; it creates no dense similarity matrix. The Go/PostgreSQL
coordinator and Python worker can run a diagnostic, shard-based
`similarity-search` pipeline locally. Its CSV artifacts are not a global result
until CTX-07--09 add planning and reduction; use the local CLI for scientific
results today. See [`STATUS.md`](STATUS.md).
The ChEMBL TSV database is intentionally not included in this repository. Download it separately and pass its path to the commands below. The expected columns are `chembl_id` and `canonical_smiles`.