Emil_Shanaty/SciMesh
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Add final result reduction
coordinator / test (push) Canceled after 0s
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Emil
2026-07-24 14:58:18 +03:00
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README.md
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SciMesh is a scientific-workload framework for molecular datasets. Its public CLI
runs exact similarity search and sparse similarity-graph construction locally in
one Python process; it creates no dense similarity matrix. The Go/PostgreSQL
coordinator and Python worker can run a diagnostic, shard-based
`similarity-search` pipeline locally. Its CSV artifacts are not a global result
until CTX-07--09 add planning and reduction; use the local CLI for scientific
results today. See [`STATUS.md`](STATUS.md).
coordinator and Python worker can run a shard-based `similarity-search`
pipeline locally. After every shard succeeds, the coordinator deterministically
merges its candidates into one final global top-k CSV. See
[`STATUS.md`](STATUS.md).
The ChEMBL TSV database is intentionally not included in this repository. Download it separately and pass its path to the commands below. The expected columns are `chembl_id` and `canonical_smiles`.