Fix relative worker work directory

scimesh/worker/config.py

@@ -68,6 +68,10 @@ class WorkerConfig:
             _positive_number(self.cleanup_after_seconds, "cleanup_after_seconds", allow_zero=True)
         if not self.capabilities:
             raise ValueError("capabilities cannot be empty")
+        # Runner subprocesses use a task directory as their cwd. Keep the
+        # configured root absolute so input/output paths remain valid there
+        # even when the CLI received a convenient relative --work-dir value.
+        object.__setattr__(self, "work_dir", self.work_dir.expanduser().resolve())
 
     @classmethod
     def from_environment(

scimesh/worker/runners.py

@@ -18,6 +18,9 @@ class SciMeshRunner:
     """Allowlisted adapter from coordinator workloads to the local SciMesh CLI."""
 
     def run(self, task: ClaimedTask, task_dir: Path) -> RunResult:
+        # The subprocess changes cwd to task_dir. Absolute paths keep a caller
+        # supplied relative work directory from being resolved twice.
+        task_dir = task_dir.resolve()
         input_path = task_dir / "input"
         output_path = task_dir / "result.csv"
         # The coordinator contract historically used underscores while the