Emil_Shanaty/SciMesh
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Harden worker contract and transport

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Emil
2026-07-23 20:49:50 +03:00
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README.md
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# SciMesh
SciMesh is a small local framework for scientific workloads on molecular datasets. It currently provides exact molecular similarity search and exact sparse similarity-graph construction. It runs in one local Python process: there is no network service, multiprocessing, coordinator, database, or dense similarity matrix.
SciMesh is a scientific-workload framework for molecular datasets. Its public CLI
currently runs exact similarity search and sparse similarity-graph construction
locally in one Python process; it creates no dense similarity matrix. A Python
Worker client and the planned Go/PostgreSQL coordinator contract are tracked in
the repository, but distributed execution is not available yet; see
[`STATUS.md`](STATUS.md).
The ChEMBL TSV database is intentionally not included in this repository. Download it separately and pass its path to the commands below. The expected columns are `chembl_id` and `canonical_smiles`.