187 lines
8.2 KiB
Python
187 lines
8.2 KiB
Python
from __future__ import annotations
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import hashlib
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from pathlib import Path
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import time
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from datetime import datetime, timedelta, timezone
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from urllib.request import Request
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import pytest
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from scimesh.worker.config import WorkerConfig
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from scimesh.worker.coordinator import CoordinatorTransientError
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from scimesh.worker.daemon import LeaseHeartbeat, WorkerDaemon
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from scimesh.worker.models import ClaimedTask, InputArtifact, ProducedArtifact, RunResult
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from scimesh.worker.artifacts import HttpArtifactClient, _SameOriginAuthRedirectHandler, _origin
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from scimesh.worker.runners import SciMeshRunner
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class FakeCoordinator:
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def __init__(self, task: ClaimedTask | None) -> None:
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self.task, self.submissions, self.failures, self.heartbeats = task, [], [], []
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def claim(self, worker_id: str, capabilities: tuple[str, ...]) -> ClaimedTask | None:
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task, self.task = self.task, None
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return task
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def submit(self, task: ClaimedTask, payload: dict) -> None:
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self.submissions.append(payload)
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def fail(self, task: ClaimedTask, payload: dict) -> None:
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self.failures.append(payload)
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def heartbeat(self, task: ClaimedTask, worker_id: str) -> str:
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self.heartbeats.append((task.task_id, task.attempt, worker_id))
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return (datetime.now(timezone.utc) + timedelta(seconds=1)).isoformat()
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class FakeArtifacts:
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def __init__(self, content: bytes) -> None:
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self.content, self.uploaded = content, []
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def download(self, uri: str, destination: Path) -> None:
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destination.write_bytes(self.content)
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def upload(self, task: ClaimedTask, worker_id: str, artifact: ProducedArtifact) -> str:
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self.uploaded.append((task.task_id, worker_id, artifact.path))
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return f"https://example.test/tasks/{task.task_id}/artifacts/{artifact.path.name}"
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class FakeRunner:
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def __init__(self) -> None:
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self.calls = 0
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def run(self, task: ClaimedTask, task_dir: Path) -> RunResult:
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self.calls += 1
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output = task_dir / "result.csv"
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output.write_text("id,score\na,1\n", encoding="utf-8")
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return RunResult((ProducedArtifact(output, "text/csv"),), {"processed_rows": 1})
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def make_task(content: bytes, checksum: str | None = None) -> ClaimedTask:
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lease = (datetime.now(timezone.utc) + timedelta(seconds=60)).isoformat()
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return ClaimedTask("task-1", 1, lease, "similarity-search", InputArtifact("https://example.test/input", checksum or hashlib.sha256(content).hexdigest()), {"query_id": "CHEMBL1"})
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def daemon(tmp_path: Path, task: ClaimedTask | None, content: bytes):
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coordinator, artifacts, runner = FakeCoordinator(task), FakeArtifacts(content), FakeRunner()
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config = WorkerConfig("https://example.test", "worker-1", tmp_path / "work")
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return WorkerDaemon(config, coordinator, artifacts, runner), coordinator, artifacts, runner, config
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def test_claims_runs_uploads_and_submits_csv(tmp_path: Path) -> None:
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content = b"input fixture"
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worker, coordinator, artifacts, runner, _ = daemon(tmp_path, make_task(content), content)
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assert worker.run_once() is True
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assert runner.calls == 1
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assert len(artifacts.uploaded) == 1
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assert coordinator.heartbeats == [("task-1", 1, "worker-1")]
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assert coordinator.submissions[0]["status"] == "completed"
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assert coordinator.submissions[0]["result"]["content_type"] == "text/csv"
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assert coordinator.submissions[0]["result"]["uri"].startswith("https://example.test/tasks/task-1/artifacts/")
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def test_no_task_does_not_create_directory(tmp_path: Path) -> None:
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worker, _, _, runner, config = daemon(tmp_path, None, b"")
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assert worker.run_once() is False
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assert runner.calls == 0
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assert not config.work_dir.exists()
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def test_bad_checksum_reports_failure_without_running(tmp_path: Path) -> None:
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worker, coordinator, _, runner, _ = daemon(tmp_path, make_task(b"actual", "not-the-hash"), b"actual")
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assert worker.run_once() is True
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assert runner.calls == 0
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assert coordinator.failures[0]["error_code"] == "ValueError"
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assert not coordinator.submissions
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def test_transient_claim_error_is_propagated_for_bounded_backoff(tmp_path: Path) -> None:
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class UnavailableCoordinator(FakeCoordinator):
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def claim(self, worker_id: str, capabilities: tuple[str, ...]) -> ClaimedTask | None:
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raise CoordinatorTransientError("temporary outage")
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worker, _, _, _, _ = daemon(tmp_path, None, b"")
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worker.coordinator = UnavailableCoordinator(None)
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with pytest.raises(CoordinatorTransientError):
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worker.run_once()
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def test_task_directories_are_retained_until_cleanup_is_enabled(tmp_path: Path) -> None:
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content = b"input fixture"
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worker, _, _, _, config = daemon(tmp_path, make_task(content), content)
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worker.run_once()
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task_dir = config.work_dir / "task-1" / "1"
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assert task_dir.is_dir()
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worker.config = WorkerConfig(**{**config.__dict__, "cleanup_after_seconds": 0})
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worker._cleanup_expired_directories()
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assert not task_dir.exists()
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def test_input_token_is_sent_only_to_the_coordinator_origin() -> None:
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client = HttpArtifactClient("https://coordinator.example/api", 10, "secret")
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assert client._auth_headers_for("https://coordinator.example/tasks/1/input") == {"Authorization": "Bearer secret"}
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assert client._auth_headers_for("https://bucket.example/presigned") == {}
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def test_redirect_to_external_storage_strips_authorization() -> None:
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handler = _SameOriginAuthRedirectHandler(_origin("https://coordinator.example"))
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source = Request(
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"https://coordinator.example/tasks/1/input", headers={"Authorization": "Bearer secret"}
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)
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redirected = handler.redirect_request(source, None, 302, "Found", {}, "https://bucket.example/presigned")
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assert redirected is not None
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assert redirected.get_header("Authorization") is None
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def test_lease_is_renewed_while_a_runner_is_still_working(tmp_path: Path) -> None:
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content = b"input fixture"
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worker, coordinator, _, _, config = daemon(tmp_path, make_task(content), content)
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class SlowRunner(FakeRunner):
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def run(self, task: ClaimedTask, task_dir: Path) -> RunResult:
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time.sleep(0.05)
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return super().run(task, task_dir)
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worker.runner = SlowRunner()
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worker.config = WorkerConfig(**{**config.__dict__, "heartbeat_interval": 0.01})
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worker.run_once()
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assert len(coordinator.heartbeats) >= 2
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def test_heartbeat_reschedules_from_the_renewed_lease(tmp_path: Path) -> None:
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class ShortLeaseCoordinator(FakeCoordinator):
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def heartbeat(self, task: ClaimedTask, worker_id: str) -> str:
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self.heartbeats.append((task.task_id, task.attempt, worker_id))
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return (datetime.now(timezone.utc) + timedelta(seconds=0.02)).isoformat()
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config = WorkerConfig(
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"https://example.test", "worker-1", tmp_path / "work", heartbeat_interval=1
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)
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coordinator = ShortLeaseCoordinator(None)
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heartbeat = LeaseHeartbeat(make_task(b"fixture"), coordinator, config)
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heartbeat.start()
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time.sleep(0.06)
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heartbeat.stop()
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assert len(coordinator.heartbeats) >= 3
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def test_runner_maps_graph_and_smiles_search_parameters(tmp_path: Path, monkeypatch: pytest.MonkeyPatch) -> None:
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commands: list[list[str]] = []
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def fake_run(command: list[str], **_: object) -> None:
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commands.append(command)
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output = Path(command[command.index("--output") + 1])
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output.parent.mkdir(parents=True, exist_ok=True)
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output.write_text("a,b\n", encoding="utf-8")
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monkeypatch.setattr("scimesh.worker.runners.subprocess.run", fake_run)
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runner = SciMeshRunner()
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graph = ClaimedTask("graph", 1, "2026-07-30T00:00:00Z", "similarity-graph", InputArtifact("https://example/input", "x"), {"threshold": 0.2, "threshold_direction": "less", "block_size": 42, "max_rows": 7, "progress_every": 0})
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search = ClaimedTask("search", 1, "2026-07-30T00:00:00Z", "similarity-search", InputArtifact("https://example/input", "x"), {"query_smiles": "CCO", "top_k": 3})
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runner.run(graph, tmp_path / "graph")
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runner.run(search, tmp_path / "search")
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assert "--threshold-direction" in commands[0] and "less" in commands[0]
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assert "--block-size" in commands[0] and "42" in commands[0]
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assert "--max-rows" in commands[0] and "7" in commands[0]
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assert "--query-smiles" in commands[1] and "CCO" in commands[1]
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