diff --git a/.gitignore b/.gitignore index 9064167..b6523cd 100644 --- a/.gitignore +++ b/.gitignore @@ -10,3 +10,6 @@ coverage/ .DS_Store .idea/ .vscode/ + +# Generated knowledge-graph output (regenerated by `graphify update .`) +graphify-out/ diff --git a/graphify-out/.graphify_labels.json b/graphify-out/.graphify_labels.json deleted file mode 100644 index 3c0e6c1..0000000 --- a/graphify-out/.graphify_labels.json +++ /dev/null @@ -1,23 +0,0 @@ -{ - "0": "Community 0", - "1": "Community 1", - "2": "Community 2", - "3": "Community 3", - "4": "Community 4", - "5": "Community 5", - "6": "Community 6", - "8": "Community 8", - "9": "Community 9", - "10": "Community 10", - "11": "Community 11", - "12": "Community 12", - "13": "Community 13", - "14": "Community 14", - "15": "Community 15", - "16": "Community 16", - "17": "Community 17", - "18": "Community 18", - "19": "Community 19", - "20": "Community 20", - "21": "Community 21" -} diff --git a/graphify-out/.graphify_root b/graphify-out/.graphify_root deleted file mode 100644 index 945c9b4..0000000 --- a/graphify-out/.graphify_root +++ /dev/null @@ -1 +0,0 @@ -. \ No newline at end of file diff --git a/graphify-out/GRAPH_REPORT.md b/graphify-out/GRAPH_REPORT.md deleted file mode 100644 index df85ca7..0000000 --- a/graphify-out/GRAPH_REPORT.md +++ /dev/null @@ -1,141 +0,0 @@ -# Graph Report - hypothesis-machine (2026-08-01) - -## Corpus Check -- 45 files · ~18,068 words -- Verdict: corpus is large enough that graph structure adds value. - -## Summary -- 331 nodes · 619 edges · 21 communities (14 shown, 7 thin omitted) -- Extraction: 100% EXTRACTED · 0% INFERRED · 0% AMBIGUOUS -- Token cost: 0 input · 0 output - -## Graph Freshness -- Built from commit: `8f308ece` -- Run `git rev-parse HEAD` and compare to check if the graph is stale. -- Run `graphify update .` after code changes (no API cost). - -## Community Hubs (Navigation) -- [[_COMMUNITY_Community 0|Community 0]] -- [[_COMMUNITY_Community 1|Community 1]] -- [[_COMMUNITY_Community 2|Community 2]] -- [[_COMMUNITY_Community 3|Community 3]] -- [[_COMMUNITY_Community 4|Community 4]] -- [[_COMMUNITY_Community 5|Community 5]] -- [[_COMMUNITY_Community 6|Community 6]] -- [[_COMMUNITY_Community 8|Community 8]] -- [[_COMMUNITY_Community 9|Community 9]] -- [[_COMMUNITY_Community 10|Community 10]] -- [[_COMMUNITY_Community 11|Community 11]] -- [[_COMMUNITY_Community 12|Community 12]] -- [[_COMMUNITY_Community 13|Community 13]] -- [[_COMMUNITY_Community 14|Community 14]] -- [[_COMMUNITY_Community 15|Community 15]] -- [[_COMMUNITY_Community 16|Community 16]] -- [[_COMMUNITY_Community 17|Community 17]] -- [[_COMMUNITY_Community 18|Community 18]] -- [[_COMMUNITY_Community 19|Community 19]] -- [[_COMMUNITY_Community 20|Community 20]] - -## God Nodes (most connected - your core abstractions) -1. `AgentTree` - 44 edges -2. `ResearchMemory` - 22 edges -3. `SupervisorIntegration` - 22 edges -4. `RunStore` - 21 edges -5. `WebGateway` - 18 edges -6. `AgentRecord` - 18 edges -7. `ResearchLoop` - 14 edges -8. `ExperimentRunner` - 14 edges -9. `compilerOptions` - 13 edges -10. `HypothesisMachineConfig` - 10 edges - -## Surprising Connections (you probably didn't know these) -- `FakeRuntime` --implements--> `AgentRuntime` [EXTRACTED] - tests/helpers.ts → src/types.ts -- `TreeRow` --references--> `AgentRecord` [EXTRACTED] - src/agent-tree-ui.ts → src/types.ts -- `FakeRuntimeFactory` --implements--> `AgentRuntimeFactory` [EXTRACTED] - tests/helpers.ts → src/types.ts -- `AgentTree` --references--> `AgentFactory` [EXTRACTED] - src/agent-tree.ts → src/agent-factory.ts -- `AgentTree` --references--> `RunManifest` [EXTRACTED] - src/agent-tree.ts → src/run-store.ts - -## Import Cycles -- None detected. - -## Communities (21 total, 7 thin omitted) - -### Community 0 - "Community 0" -Cohesion: 0.06 -Nodes (34): DEFAULT_CONFIG, HypothesisMachineConfig, loadConfig(), hypothesisMachine(), PiRuntimeDependencies, frontmatterDocument(), MEMORY_STATUSES, MEMORY_TYPES (+26 more) - -### Community 1 - "Community 1" -Cohesion: 0.12 -Nodes (3): AgentTree, PiAgentRuntimeFactory, AgentResult - -### Community 2 - "Community 2" -Cohesion: 0.07 -Nodes (25): Browser Use adapter contract, Contributing, Local setup, Pull requests, Architecture, Development, Assumptions corrected after verification, Implemented here (+17 more) - -### Community 3 - "Community 3" -Cohesion: 0.06 -Nodes (33): dependencies, @earendil-works/pi-agent-core, @earendil-works/pi-ai, @earendil-works/pi-coding-agent, @earendil-works/pi-tui, typebox, yaml, description (+25 more) - -### Community 4 - "Community 4" -Cohesion: 0.18 -Nodes (8): activityCache, agentLastActivity(), collapse(), createAgentPanelComponent(), createAgentTreeOverlay(), STATUS_COLOR, STATUS_ICON, TreeRow - -### Community 6 - "Community 6" -Cohesion: 0.12 -Nodes (15): AgentFactory, taskFingerprint(), AgentTreeError, TreeOptions, RunManifest, RunStore, AgentRecord, AgentRuntime (+7 more) - -### Community 8 - "Community 8" -Cohesion: 0.27 -Nodes (9): AgentSpecError, ALLOWED_TOOLS, parseAgentSpec(), readAgentSpec(), REQUIRED_SECTIONS, section(), serializeAgentSpec(), writeAgentSpec() (+1 more) - -### Community 9 - "Community 9" -Cohesion: 0.22 -Nodes (4): IterationReport, LoopStatus, ResearchLoop, ResearchLoopState - -### Community 11 - "Community 11" -Cohesion: 0.13 -Nodes (14): compilerOptions, esModuleInterop, exactOptionalPropertyTypes, module, moduleResolution, noUncheckedIndexedAccess, outDir, resolveJsonModule (+6 more) - -### Community 13 - "Community 13" -Cohesion: 0.25 -Nodes (7): compilerOptions, declaration, outDir, rootDir, exclude, extends, include - -### Community 14 - "Community 14" -Cohesion: 0.40 -Nodes (4): 0.1.0 — 2026-07-31, 0.1.1 — 2026-07-31, Changelog, Unreleased - -### Community 15 - "Community 15" -Cohesion: 0.50 -Nodes (3): Security and data, Summary, Verification - -### Community 16 - "Community 16" -Cohesion: 0.50 -Nodes (3): child, commands, responses - -## Knowledge Gaps -- **105 isolated node(s):** `name`, `version`, `description`, `keywords`, `type` (+100 more) - These have ≤1 connection - possible missing edges or undocumented components. -- **7 thin communities (<3 nodes) omitted from report** — run `graphify query` to explore isolated nodes. - -## Suggested Questions -_Questions this graph is uniquely positioned to answer:_ - -- **Why does `AgentTree` connect `Community 1` to `Community 0`, `Community 10`, `Community 4`, `Community 6`?** - _High betweenness centrality (0.107) - this node is a cross-community bridge._ -- **Why does `SupervisorIntegration` connect `Community 10` to `Community 0`, `Community 1`, `Community 9`?** - _High betweenness centrality (0.063) - this node is a cross-community bridge._ -- **Why does `ResearchMemory` connect `Community 0` to `Community 10`?** - _High betweenness centrality (0.045) - this node is a cross-community bridge._ -- **What connects `name`, `version`, `description` to the rest of the system?** - _105 weakly-connected nodes found - possible documentation gaps or missing edges._ -- **Should `Community 0` be split into smaller, more focused modules?** - _Cohesion score 0.058596491228070174 - nodes in this community are weakly interconnected._ -- **Should `Community 1` be split into smaller, more focused modules?** - _Cohesion score 0.11942959001782531 - nodes in this community are weakly interconnected._ -- **Should `Community 2` be split into smaller, more focused modules?** - _Cohesion score 0.0677361853832442 - nodes in this community are weakly interconnected._ \ No newline at end of file diff --git a/graphify-out/cache/ast/v0.8.44/1df6daad97435ab70a984f401eab97094277dd7835d479d2967e1ec1623d79fd.json b/graphify-out/cache/ast/v0.8.44/1df6daad97435ab70a984f401eab97094277dd7835d479d2967e1ec1623d79fd.json deleted file mode 100644 index 2a85974..0000000 --- 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